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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000611 | MEGA | File Conversion | public | 2017-11-27 13:14 | 2017-11-28 08:20 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | PC | OS | Windows | ||||||
| Product Version | MEGA 11 (Graphical Interface version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0000611: Invalid base found: , (in line 7) | ||||||||
| Description | here is the file as converted from fasta to .meg this is apparently not correct, but I cannot determine why. It says there is an comma at position 6 in line 7 and there is not one. | ||||||||
| Steps To Reproduce | Run dump.meg file with given information through mega. Fail to produce results. | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Colin | ||||||||
| Last Name | Brose | ||||||||
| gbrose@hotmail.com | |||||||||
| Confirm Email | gbrose@hotmail.com | ||||||||
| Attached Files |  dump.meg (1,471 bytes) 2017-11-27 13:14 | ||||||||
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(0003892) gstecher (administrator) 2017-11-28 08:20 |
Hi Colin, I am writing in response to your question regarding the MEGA software. The dump.meg file you have is not formatted properly. First, commas are not allowed in sequence names so you should remove those. Second, the sequences are not aligned so you cannot put them into a .meg file. You should keep the data in a fasta formatted file, open it in MEGA, align the sequences, then export to the .meg format. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2017-11-27 13:14 | guest | New Issue | |
| 2017-11-27 13:14 | guest | File Added: dump.meg | |
| 2017-11-28 08:20 | gstecher | Note Added: 0003892 | |
| 2017-11-28 08:20 | gstecher | Status | new => resolved |
| 2017-11-28 08:20 | gstecher | Resolution | open => no change required |
| 2017-11-28 08:20 | gstecher | Assigned To | => gstecher |
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Issue History |
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