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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000700 | MEGA | [All Projects] Feedback | public | 2018-03-12 22:34 | 2018-03-13 07:27 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | OS | ||||||||
| Product Version | MEGA-CC 11 (command line version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0000700: Can I use nohup in MEGA-CC? | ||||||||
| Description | I am a Chinese user who starts to learn Linux. My Linux system is CentOS and I just download other linux version. After 'tar' the package, I write alias in .bashrc but I failed to use nohup function to make MEGA-CC working behind. When comparing over 20 sequences of gene with clustalW, I feel it really important to use 'nohup &' because MEGA-CC only use 6% of my CPU (Can it work in multithreading？) and I have to wait long time. I want to use ramaining cores to do docking or else.Please help. | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Shijie | ||||||||
| Last Name | FAN | ||||||||
| 729502425@qq.com | |||||||||
| Confirm Email | 729502425@qq.com | ||||||||
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(0003945) gstecher (administrator) 2018-03-13 07:27 |
Hi Shijie, I am writing in response to your question regarding the MEGA-CC software. Yes, you can use nohup to run megacc on Linux. Just call it like: nohup megacc -a settings.mao -d seqdata.fas As far as multithreading, the ClustalW implementation in megacc is not multithreaded. If you have an alignment that is taking a long time you can use the MUSCLE option in megacc instead of ClustalW. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2018-03-12 22:34 | guest | New Issue | |
| 2018-03-13 07:27 | gstecher | Note Added: 0003945 | |
| 2018-03-13 07:27 | gstecher | Status | new => resolved |
| 2018-03-13 07:27 | gstecher | Resolution | open => no change required |
| 2018-03-13 07:27 | gstecher | Assigned To | => gstecher |
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Issue History |
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