0000706: Question regarding CLUSTALW

(0000642)
paul (reporter)
1969-12-31 17:33

The bug is true.

(0000658)
paul (reporter)
1969-12-31 17:33

Sudhir fixed the bug. Close.

(0003953)
gstecher (administrator)
2018-03-27 12:41

Hi Ivo,

I am writing in response to your question regarding the ClustalW implementation in MEGA. The version of ClustalW that is used in MEGA5 is the one described in the paper listed below:

Higgins D., Thompson J., Gibson T. Thompson J. D., Higgins D. G., Gibson T. J.
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Nucleic Acids Res. 22:4673-4680. (1994)

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu

Issue History
Date Modified	Username	Field	Change
2018-03-24 10:13	guest	New Issue
2018-03-27 12:41	gstecher	Note Added: 0003953
2018-03-27 12:41	gstecher	Status	new => resolved
2018-03-27 12:41	gstecher	Resolution	open => no change required
2018-03-27 12:41	gstecher	Assigned To	=> gstecher

Notes
(0000642) paul (reporter) 1969-12-31 17:33	The bug is true.

(0000658) paul (reporter) 1969-12-31 17:33	Sudhir fixed the bug. Close.

(0003953) gstecher (administrator) 2018-03-27 12:41	Hi Ivo, I am writing in response to your question regarding the ClustalW implementation in MEGA. The version of ClustalW that is used in MEGA5 is the one described in the paper listed below: Higgins D., Thompson J., Gibson T. Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680. (1994) -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu

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