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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0001585 | MEGA | [All Projects] Feedback | public | 2019-11-21 10:31 | 2019-11-21 11:47 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | OS | ||||||||
| Product Version | MEGA 11 (Graphical Interface version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0001585: Multiple sequence input | ||||||||
| Description | Hi, I'm trying to use MEGA to make a tree and an alignment, starting from a curated multi-fasta file containing a large number of sequences (>1000). Each sequence in the unique text file is preceded by a header, for example >Acas_1_10 How can I input a this large number of sequences ? Would it be possible to create a single MEGA file containing all sequences ? Or do I have to create an individual file for each protein to be aligned? Thanks in advance for your help! | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Francois | ||||||||
| Last Name | Robin | ||||||||
| francois.robin@upmc.fr | |||||||||
| Confirm Email | francois.robin@upmc.fr | ||||||||
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(0004336) gstecher (administrator) 2019-11-21 11:47 |
Hi Francois, I am writing in response to your question regarding the MEGA software. Are you trying to concatenate multiple gene sequences to create a single alignment file? If so, there is an option in MEGAX to concatenate multiple fasta files. First, you copy all the files you want to concatenate into a single directory. Then on the MEGAX main form, click Data->Concatenate Sequence Alignments. MEGAX will prompt you for the directory containing your fasta files and then try and concatenate them. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 1969-12-31 17:33 | ddview | New Issue | |
| 2019-11-21 10:31 | guest | New Issue | |
| 2019-11-21 11:47 | gstecher | Note Added: 0004336 | |
| 2019-11-21 11:47 | gstecher | Status | new => resolved |
| 2019-11-21 11:47 | gstecher | Resolution | open => no change required |
| 2019-11-21 11:47 | gstecher | Assigned To | => gstecher |
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Issue History |
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