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| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0001980 | MEGA | Tree Explorer | public | 2020-05-12 06:09 | 2023-04-14 18:37 |
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| Reporter | guest | |
| Assigned To | | |
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | new | Resolution | open | |
| Platform | PC | OS | Windows | |
| Product Version | MEGA 11 (Graphical Interface version) | |
| Target Version | | Fixed in Version | | |
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| Summary | 0001980: Incomplete bootstrap value display |
| Description | The protein sequences of wheat were aligned using muscle method in Mega X, and then the alignment results were construct a phylogenetic tree using the neighbor-joining method with 1, 000 bootstrap replicates.However, the bootstrap value cannot be fully displayed when constructing the NJ tree or ML tree; Besides, after exported the nwk file and use it constructed tree in other softwares(i.e. Evolview, iTOL), it is not consistent with the tree in Mega X! |
| Steps To Reproduce | Align(muscle) ----> construct ML tree (or NJ tree) ----> the bootstrap value cannot be fully displayed |
| Additional Information | Here is the nwk file with bootstraps:
((((TraesCS4B02G079300.1,TraesCS5B02G406400.1)1.0000,(TraesCS2D02G170700.1,TraesCS2A02G493800.1)0.9920)0.8870,TraesCS1D02G218200.1)1.0000,TraesCS2A02G303900.1,TraesCS2D02G577000.1,TraesCS3B02G413800.1);
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| Tags | No tags attached. |
| Attach Tags | (Separate by ",")
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| First Name | wengen |
| Last Name | zhu |
| Email | m15211072394_1@163.com |
| Confirm Email | m15211072394_1@163.com |
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| Attached Files |  SnRK2.pep_wheat.fasta (3,091 bytes) 2020-05-12 06:09 |
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