0002076: Using MEGA in an HPC Environment - MantisBT

MantisBT

View Issue Details [ Jump to Notes ]

[ Issue History ] [ Print ]

ID

Project

Category

View Status

Date Submitted

Last Update

0002076

MEGA

[All Projects] Feedback

public

2020-06-17 09:23

2020-06-17 11:28

Reporter

guest

Assigned To

gstecher

Priority

normal

Severity

minor

Reproducibility

have not tried

Status

resolved

Resolution

no change required

Platform

OS

Product Version

MEGA 11 (Graphical Interface version)

Target Version

Fixed in Version

Summary

0002076: Using MEGA in an HPC Environment

Description

Hello,

I am looking for guidance on how best to install and manage bothe the MEGA GUI and MEGA-CC software in our HPC environement. It looks like the commandline software can be managed and installed quite easily through spack, our software management system, but I am wondering how best to install the GUI.

Users access the through login nodes which are not used for processing so I am wondering how resource intensive is the GUI Analysis portion of the process is?

Jim

Tags

No tags attached.

Attach Tags

(Separate by ",")

First Name

james

Last Name

wilson

Email

james.wilson6@nih.gov

Confirm Email

james.wilson6@nih.gov

bugreport (2).txt (16,849 bytes) 1969-12-31 17:33

Relationships

Notes
(0004478) gstecher (administrator) 2020-06-17 11:28	Hi James, I am writing in response to your question regarding the MEGA software. MEGA-GUI is developed as a desktop application and we have not tried using it in an HPC environment so unfortunately we don't have any instructions for doing so. The GUI by itself requires more resources than the MEGA-CC version but those resources are not great (0000180:0000100 MB of RAM and a little bit of CPU time). But keep in mind that MEGA-GUI and MEGA-CC are completely separate applications, they just have different user interfaces (GUI and CLI). So if an analysis is run using the GUI, it will require whatever resources are needed for processing the analysis. Depending on the input data, analysis, and settings, these resources can be quite large. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu

Issue History
Date Modified	Username	Field	Change
1969-12-31 17:33	Nikita Vikhrev	Note Added: 0001857
1969-12-31 17:33	Nikita Vikhrev	Note Edited: 0001857
1969-12-31 17:33	Nikita Vikhrev	Note Edited: 0001857
1969-12-31 17:33	user19	Note Added: 0001858
1969-12-31 17:33	user19	Status	new => resolved
1969-12-31 17:33	user19	Resolution	open => fixed
1969-12-31 17:33	user19	Assigned To	=> user19
2020-06-17 09:23	guest	New Issue
2020-06-17 11:28	gstecher	Note Deleted: 0001857
2020-06-17 11:28	gstecher	Note Deleted: 0001858
2020-06-17 11:28	gstecher	Note Added: 0004478
2020-06-17 11:28	gstecher	Status	new => resolved
2020-06-17 11:28	gstecher	Resolution	open => no change required
2020-06-17 11:28	gstecher	Assigned To	=> gstecher

Copyright © 2000 - 2024 MantisBT Team