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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0002432 | MEGA | [All Projects] Feedback | public | 2020-12-14 04:44 | 2020-12-14 11:13 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | OS | ||||||||
| Product Version | MEGA-CC 11 (command line version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0002432: issue with infer_ML .mao file | ||||||||
| Description | I tried to generate a "construct/test ML tree" with the following command line : megacc -d infer_ML_proteinvitesfourmis.mao -a AlignementcDNAFourmisMegaPMuscle.fasta -g outgroup.txt -o ML_tree_cDNAFourmisK2G error message : Message = Unable to read version of MEGA Analysis Options (.mao) file Message = Could not find the entry [ProcessTypes] in the MEGA Analysis Options (.mao) file provided | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Elsa | ||||||||
| Last Name | Bonnafe | ||||||||
| elsa.bonnafe@univ-jfc.fr | |||||||||
| Confirm Email | elsa.bonnafe@univ-jfc.fr | ||||||||
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(0004532) gstecher (administrator) 2020-12-14 11:13 |
Hi Elsa, I am writing in response to your question regarding the MEGA-CC software. It looks like you have a couple of command line parameters switched. You wrote that you call megacc like: megacc -d infer_ML_proteinvitesfourmis.mao -a AlignementcDNAFourmisMegaPMuscle.fasta -g outgroup.txt -o ML_tree_cDNAFourmisK2G but it should be called like: megacc -a infer_ML_proteinvitesfourmis.mao -d AlignementcDNAFourmisMegaPMuscle.fasta -g outgroup.txt -o ML_tree_cDNAFourmisK2G Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2020-12-14 04:44 | guest | New Issue | |
| 2020-12-14 11:13 | gstecher | Note Added: 0004532 | |
| 2020-12-14 11:13 | gstecher | Status | new => resolved |
| 2020-12-14 11:13 | gstecher | Resolution | open => no change required |
| 2020-12-14 11:13 | gstecher | Assigned To | => gstecher |
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Issue History |
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