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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||||||
| 0002461 | MEGA | [All Projects] Feedback | public | 2020-12-30 11:49 | 2020-12-30 11:49 | ||||||||
| Reporter | guest | ||||||||||||
| Assigned To | |||||||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||||||
| Status | new | Resolution | open | ||||||||||
| Platform | OS | ||||||||||||
| Product Version | MEGA 11 (Graphical Interface version) | ||||||||||||
| Target Version | Fixed in Version | ||||||||||||
| Summary | 0002461: Steps described in the book PTME5 | ||||||||||||
| Description | Dear Sirs or Madams: I run the steps described in the book (https://oup-arc.com/access/hall-5e [^]) using the MEGA X (10.1.8) on macOS 10.15.7. p.22-23: Clicking the GenBank link next to the Range for the second sequence in the list did not take me to the corresponding GenBank file. p.87-93: The "Original Tree" tab and "Bootstrap Consensus tree" tab either appear or disappear when I resize the window. p.96: Clicking OK did not show the majority-rule tree like Figure 6.12. | ||||||||||||
| Tags | No tags attached. | ||||||||||||
| Attach Tags | (Separate by ",") | ||||||||||||
| First Name | Haruo | ||||||||||||
| Last Name | Suzuki | ||||||||||||
| haruo@sfc.keio.ac.jp | |||||||||||||
| Confirm Email | haruo@sfc.keio.ac.jp | ||||||||||||
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(0001988) user19 1969-12-31 17:33 |
Emailed the user asking for additional information on what happened with the crash, was it a hung program, crash, crash with error message, etc. |
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(0002635) user614 1969-12-31 17:33 |
This is easily reproduced using the attached file. Just do MP phylogeny inference using min-mini and search level 1. Mega will start the analysis. Then progress stops (for me at 12% with 177 trees examined)and Mega appears to be stuck in some kind of loop as it is using all the processing power it can get but is making no progress. I let it run for several hours without examining more than 177 trees (which only took a few seconds). |
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(0002672) user19 1969-12-31 17:33 |
We are getting stuck in the MiniMiniSearch procedure. The MiniMiniSearch procedure is recursive. MiniMini calls itself until we get to n=193, in this case every single time the loop executes (about 195 times) we call MiniMiniSearch(194), which itself runs a couple hundred times each call. I think this is a bound calculation issue. |
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Issue History |
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| Date Modified | Username | Field | Change |
| 1969-12-31 17:33 | user19 | Note Added: 0001988 | |
| 1969-12-31 17:33 | user19 | Status | new => assigned |
| 1969-12-31 17:33 | user19 | Assigned To | => user19 |
| 1969-12-31 17:33 | user614 | Note Added: 0002635 | |
| 1969-12-31 17:33 | user19 | Note Added: 0002672 | |
| 2020-12-30 11:49 | guest | New Issue | |
| 2021-01-04 07:44 | gstecher | File Deleted: TranslationResult.meg | |
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Issue History |
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