| View Issue Details [ Jump to Notes ] | [ Issue History ] [ Print ] |
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0005713 | MEGA | Alignment Explorer | public | 2023-08-23 00:47 | 2023-08-23 00:47 |
|
| Reporter | guest | |
| Assigned To | | |
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | new | Resolution | open | |
| Platform | PC | OS | Linux | |
| Product Version | MEGA 11 (Graphical Interface version) | |
| Target Version | | Fixed in Version | | |
|
| Summary | 0005713: Fasta header names change |
| Description | When loading in the sequences from .fasta file into MEGA alignment viewer the header names are processed in a way that removes the underline. ex. WP_189318088.1 becomes WP 099680089.1 this behavior introduces unwanted spaces which otherwise are often reserved as delimiters between sequence ID code, Taxa, Description, Name. |
| Steps To Reproduce | -Open alignment tool and select reading in .fasta from user file.
-Read in .fasta file with sequence headers that contain underlines (download any from uniprot.com).
-Compare MEGA displayed sequence ID with the raw header in the initial .fasta file. |
| Additional Information | This behavior leads to non-standard .fasta files that are barely viable for other downstream tools/use cases. |
| Tags | No tags attached. |
| Attach Tags | (Separate by ",")
|
|
| First Name | Klavs |
| Last Name | Jermakovs |
| Email | klavs994@inbox.lv |
| Confirm Email | klavs994@inbox.lv |
|
| Attached Files |  comparison.fasta (2,086 bytes) 2023-08-23 00:47 |
|
Relationships 
Relationships