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| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0006134 | MEGA | [All Projects] Feedback | public | 2023-10-10 01:32 | 2023-10-10 01:32 |
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| Reporter | guest | |
| Assigned To | | |
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | new | Resolution | open | |
| Platform | | OS | | |
| Product Version | MEGA-CC 11 (command line version) | |
| Target Version | | Fixed in Version | | |
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| Summary | 0006134: Reg.Usage of nodes and threads |
| Description | While running megacc in HPC (high-performance computing) by SLURM commands.
We have 20 nodes and each node contains 40 threads in hpc
while running megacc in 10 nodes ie., 400 threads it is not working
how should I use maximum nodes and threads?.
#!/bin/bash
#SBATCH --nodes=10
#SBATCH --ntasks-per-node=40
module load mega/10.2
megacc -a protein.mao -d test_05102023.meg -t ahyp_nbs.nwk
this is snippet of code.
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| Tags | No tags attached. |
| Attach Tags | (Separate by ",")
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| First Name | Ramesh |
| Last Name | Eerapagula |
| Email | rameshe@cdfd.org.in |
| Confirm Email | rameshe@cdfd.org.in |
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| Attached Files | |
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