| View Issue Details [ Jump to Notes ] | [ Issue History ] [ Print ] |
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0006437 | MEGA | Tree Explorer | public | 2023-11-24 14:15 | 2023-11-24 14:15 |
|
| Reporter | guest | |
| Assigned To | | |
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | new | Resolution | open | |
| Platform | | OS | | |
| Product Version | MEGA 11 (Graphical Interface version) | |
| Target Version | | Fixed in Version | | |
|
| Summary | 0006437: outgroup not included when exporting timetree |
| Description | I am using RelTime-ML to calculate divergence times using MEGA11. After setting up and launching the analysis, the timetree in nexus format is missing the outgroup taxa. I can see the outgroup taxa in the original tree, and they outgroup taxa are rooting the timetree but they are in grey. However, when I export the TimeTree in nexus format, this tree is missing the outgroup taxa. How can I retain the outgroup taxa in the nexus tree format?
In addition, I have done the exact same analysis with MEGA11, with the same data, on a different computer, and then I do get the outgroup taxa in my exported TimeTree in nexus format. So I am also wondering why there is this difference in the output between different MEGA11 installations. |
| Steps To Reproduce | Load DNA alignment
Choose RelTime-ML analysis. Load a tree, choose calibration points, set up options, i.e. GTR model with gamma distribution of rates with a proportion of invariants sites, and 4 rate categories. All sites included in the analysis. |
| Tags | No tags attached. |
| Attach Tags | (Separate by ",")
|
|
| First Name | Vera |
| Last Name | Tai |
| Email | vtai4@uwo.ca |
| Confirm Email | vtai4@uwo.ca |
|
| Attached Files | |
|
Relationships 
Relationships