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| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0006529 | MEGA | Tree Explorer | public | 2024-03-23 17:31 | 2024-03-23 17:31 |
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| Reporter | guest | |
| Assigned To | | |
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | new | Resolution | open | |
| Platform | PC | OS | Windows | |
| Product Version | MEGA 11 (Graphical Interface version) | |
| Target Version | | Fixed in Version | | |
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| Summary | 0006529: MEGA 11 Crashes on ML tree with substitution models |
| Description | I have a small dataset to analyze (32 short (0001555:0001350 nt) sequences) that I am trying to run Maximum Likelyhood phylogeny analysis with kimura 2-parameter model and 250 bootstrap (tried from 1000 down same results), and the Program crashes on bootstraping around 50-100 bootstraps in, or freezes around 60th bootstrap and just hangs without doing much. |
| Steps To Reproduce | Load in provided sequence alignment in analyze mode
Protein coding sequences = Yes
Phylogeny -> Construct/Test Maximum Likelihood tree
Bootstrap = 250
Model = Kimura 2-parameter model
Rates among sites = Gamma distributed with invariant sites (G+I)
Gaps/Missing Data Treatment = Partial deletion
Cutoff = 80%
Number of threads = 8 |
| Tags | No tags attached. |
| Attach Tags | (Separate by ",")
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|
| First Name | Jakub |
| Last Name | SusoĊ |
| Email | susolek@gmail.com |
| Confirm Email | susolek@gmail.com |
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| Attached Files |  16S_consensus_BLAST_aln.fas (52,360 bytes) 2024-03-23 17:31 |
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