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ID | Project | Category | View Status | Date Submitted | Last Update | ||||
0000066 | MEGA | [All Projects] Feedback | public | 2016-02-23 13:52 | 2016-02-26 08:33 | ||||
Reporter | guest | ||||||||
Assigned To | gstecher | ||||||||
Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
Status | resolved | Resolution | no change required | ||||||
Platform | OS | ||||||||
Product Version | MEGA 11 (Graphical Interface version) | ||||||||
Target Version | Fixed in Version | ||||||||
Summary | 0000066: Bootstrap SNP calls | ||||||||
Description | Dear Sir or Madam, I have recently used genotyping-by-sequencing to look at genetic relatedness between individuals. I would like to bootstrap the data now to get an idea how reliable the branches of my tree are. I have heard MEGA can provide this option, but I am running into problems when I try to read in the data because I do not have sequences, just SNP calls for many different loci for each individual. Anita | ||||||||
Tags | No tags attached. | ||||||||
Attach Tags | (Separate by ",") | ||||||||
First Name | Anita | ||||||||
Last Name | Kuepper | ||||||||
akuepper@rams.colostate.edu | |||||||||
Confirm Email | akuepper@rams.colostate.edu | ||||||||
Attached Files | |||||||||
Notes | |
(0003614) gstecher (administrator) 2016-02-26 08:33 |
Hi Anita, I am writing in response to your question regarding the MEGA software. To use the bootstrap feature in MEGA for tree construction, you will need to use a multiple sequence alignment as input data. I am not sure you will be able to achieve what you describe with your data using MEGA. -- Best regards, Glen Stecher |
Issue History | |||
Date Modified | Username | Field | Change |
2016-02-23 13:52 | guest | New Issue | |
2016-02-26 08:33 | gstecher | Note Added: 0003614 | |
2016-02-26 08:33 | gstecher | Status | new => resolved |
2016-02-26 08:33 | gstecher | Resolution | open => no change required |
2016-02-26 08:33 | gstecher | Assigned To | => gstecher |
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