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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000854 | MEGA | Alignment Explorer | public | 2018-07-11 03:45 | 2018-08-06 09:15 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | fixed | ||||||
| Platform | PC | OS | Windows | ||||||
| Product Version | |||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0000854: MEGAX-v10.0.04 | ||||||||
| Description | I just installed the new version, MEGA-X, 64-bit Windows version. It is impossible to align the sequences by ClustalW under standard conditions. I didn´t find the valid format of numbers while deciding ClustalW options, i.e. system is working with the full number (for example 6) but not with decimal (6.66). The SW is primarily working in country-specific format (taken from Windows) so the all numbers should be re-writen to English format (i.e. 6,66 in Czech but 6.66 in English). This problem never hapenned in the version 7 or older ones (Mega was reflecting specific conditions of Czech operation system) . SW is returning error message (in attachment) and after it is frozen, it is not possible to continue work or (at least) correctly close Alignment Explorer. | ||||||||
| Steps To Reproduce | Detailed steps: 1) Edit/build alignment 2) retrieve sequences from file (fasta or mas) 3) align by ClustalW 4) Clustal options (all numbers are "black" - valid) Error | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Dana | ||||||||
| Last Name | Safarova | ||||||||
| dana.safarova@upol.cz | |||||||||
| Confirm Email | dana.safarova@upol.cz | ||||||||
| Attached Files |  MEGAXerror.png (2,133,897 bytes) 2018-07-11 03:45 | ||||||||
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(0004075) gstecher (administrator) 2018-08-03 09:26 |
Hi Dana, I am writing in response to the bug report you recently reported regarding the MEGA software. It looks like the issue you encountered is a problem with MEGA X not working well with non-English decimal separator. Would you mind downloading and trying out a new build of MEGA X that will force the use of the dot character for the decimal separator. This new build can be downloaded from: http://www.megasoftware.net/releases/MEGA_X_10.0.4_win64_setup_180801.exe [^] Please let me know if this resolves the issue. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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(0004090) gstecher (administrator) 2018-08-06 09:15 |
Hi Glen, ye, it seems that the problem with non-English decimal separator is solved. Mega is working in this version as I'm used to. Thanks. with regards, Dana Dana Safarova, Ph.D. Deputy Head for Student Affairs Palacky University, Olomouc | Czech Republic Faculty of Science | Dept. of Cell Biology and Genetics Slechtitelu 27 | 783 71 Olomouc - Holice | Czech Republic +420 585 634 900 | +420 585 634 901 (FAX) dana.safarova@upol.cz | www.upol.cz |
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Notes |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2018-07-11 03:45 | guest | New Issue | |
| 2018-07-11 03:45 | guest | File Added: MEGAXerror.png | |
| 2018-08-03 09:26 | gstecher | Assigned To | => gstecher |
| 2018-08-03 09:26 | gstecher | Status | new => assigned |
| 2018-08-03 09:26 | gstecher | Note Added: 0004075 | |
| 2018-08-06 09:15 | gstecher | Note Added: 0004090 | |
| 2018-08-06 09:15 | gstecher | Status | assigned => resolved |
| 2018-08-06 09:15 | gstecher | Resolution | open => fixed |
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Issue History |
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