0000879: Newick export of tree is unreadable

Notes
(0004068) gstecher (administrator) 2018-08-02 08:30	Hi Meike, I am writing in response to the bug report you recently submitted regarding the MEGA software. I am not able to duplicate the error you described in your report. Regardless of which application I use to open the exported newick file, I get the same tree. The taxa may be arranged a bit differently but the topology itself is still the same.

(0004077) gstecher (administrator) 2018-08-03 09:28	Hi Glen, I installed the new build and it now works perfectly, thank you so much. Have a great weekend. Best regards, Meike --- Meike Hüdig Heinrich-Heine-University Workgroup Maurino: Plant Molecular Physiology and Biotechnology Universitätsstrasse 1, Building 26.03.U1 Room 37 40225 Düsseldorf GERMANY CEPLAS - Cluster of Excellence on Plant Science Am 2018-08-02 21:32, schrieb Glen Stecher: > Hi Meike, > > Thanks for sending that file. It looks like MEGA X wrote the newick > file using the comma character for the decimal separator but when MEGA > X reads the newick file it expects the period character for the > decimal separator. Can you download and install an updated build using > the link below. That build should force MEGA X to use the period > character as the decimal separator when writing the newick file. Then > you should be able to open the mtsx file and export the tree to a new > newick file that is formatted correctly. > > https://www.megasoftware.net/releases/MEGA_X_10.0.4_win64_setup_180801.exe [^] > > Thanks again for your help! > > > On 08/02/2018 12:26 PM, Meike Hüdig wrote: >> Hi Glen, >> just came back from brushing me teeth, of course you need the nwk file as well. facepalm >> Sorry, it's attached. The heat is getting to me. >> >> Meike >> >> --- >> Meike Hüdig >> Heinrich-Heine-University >> Workgroup Maurino: Plant Molecular Physiology and Biotechnology >> Universitätsstrasse 1, Building 26.03.U1 Room 37 >> 40225 Düsseldorf >> GERMANY >> >> CEPLAS - Cluster of Excellence on Plant Science >> >> Am 2018-08-02 21:20, schrieb Glen Stecher: >>> Hi Meike, >>> >>> Thanks for sending the screen shot. Can you also send me the Newick >>> file? From the image it looks like perhaps the decimal separator >>> character is not handled properly by MEGA. >>> >>> >>> On 08/02/2018 12:17 PM, Meike Hüdig wrote: >>>> Hi Glen, >>>> >>>> thanks for coming back to me so soon. I attached a screenshot of the tree I get, when I use MegaX (v10.0.4) for the export and re-import. Additionally, I reproduced successfully this error on my PC at home (which is also running Win10). Maybe you could give me a guess for a fix, but I knwo this might be not doable as you cannot reproduce the problem. >>>> Thank you so much anyway. >>>> >>>> Best regards, >>>> Meike >>>> >>>> --- >>>> Meike Hüdig >>>> Heinrich-Heine-University >>>> Workgroup Maurino: Plant Molecular Physiology and Biotechnology >>>> Universitätsstrasse 1, Building 26.03.U1 Room 37 >>>> 40225 Düsseldorf >>>> GERMANY >>>> >>>> CEPLAS - Cluster of Excellence on Plant Science >>>> >>>> Am 2018-08-02 17:29, schrieb Glen Stecher: >>>>> Hi Meike, >>>>> >>>>> I am writing in response to the bug report you recently submitted >>>>> regarding the MEGA software. I am not able to duplicate the error you >>>>> described in your report. Regardless of which application I use to >>>>> open the exported newick file, I get the same tree. The taxa may be >>>>> arranged a bit differently but the topology itself is still the same. >>>>> >>>>> -- Best regards, >>>>> >>>>> Glen Stecher >>>>> Institute for Genomics and Evolutionary Medicine >>>>> igem.temple.edu

Issue History
Date Modified	Username	Field	Change
2018-08-02 04:28	guest	New Issue
2018-08-02 04:28	guest	File Added: 20180724_200bootstraps_60percent.mtsx
2018-08-02 07:45	gstecher	Note Deleted: 0001055
2018-08-02 07:45	gstecher	Note Deleted: 0000931
2018-08-02 08:30	gstecher	Assigned To	=> gstecher
2018-08-02 08:30	gstecher	Status	new => assigned
2018-08-02 08:30	gstecher	Note Added: 0004068
2018-08-03 09:28	gstecher	Note Added: 0004077
2018-08-03 09:28	gstecher	Status	assigned => resolved
2018-08-03 09:28	gstecher	Resolution	open => fixed
2023-07-07 08:26	guest	Tag Attached: mega
2023-07-07 08:26	guest	Tag Detached: mega

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