0000206: Help with SSr file to UPGMA - MantisBT

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Project

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Date Submitted

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0000206

MEGA

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public

2016-07-02 11:09

2016-07-25 10:44

Reporter

guest

Assigned To

gstecher

Priority

normal

Severity

minor

Reproducibility

have not tried

Status

resolved

Resolution

no change required

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OS

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Target Version

Fixed in Version

Summary

0000206: Help with SSr file to UPGMA

Description

Good Afternoon,

I hope you could help me. I am a Msc Plant Breeding student, and i am doing my final Tesis.
I have to do an UPGMA with the DARwin program, and i have an excell file with SSr with my plant varieties, this way:

SSr 1 SSr2
Plant 123 133
1 132 133

So, I supose i have to transform my file to a matrix but i dont know exactly if in an binary one or in a Nei & Li (Dice).
Thank you !!!

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First Name

Beatriz

Last Name

Montero

Email

b.monteag@hotmail.es

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b.monteag@hotmail.es

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Notes
(0003683) gstecher (administrator) 2016-07-25 10:44	Hi Beatriz, I am writing in response to the question you recently posted to the MEGA bug tracker. In order to work with MEGA to generate a UPGMA tree, your data will need to be in either a multiple sequence alignment file or a MEGA formatted distance matrix. You can see examples of the file formats by looking at the example files that come with MEGA. -- Best regards,

Issue History
Date Modified	Username	Field	Change
2016-07-02 11:09	guest	New Issue
2016-07-25 10:44	gstecher	Note Added: 0003683
2016-07-25 10:44	gstecher	Status	new => resolved
2016-07-25 10:44	gstecher	Resolution	open => no change required
2016-07-25 10:44	gstecher	Assigned To	=> gstecher

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