0002371: No common sites - MantisBT

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ID

Project

Category

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Date Submitted

Last Update

0002371

MEGA

Tree Explorer

public

2020-11-19 18:36

2020-11-23 11:53

Reporter

guest

Assigned To

gstecher

Priority

normal

Severity

minor

Reproducibility

have not tried

Status

resolved

Resolution

no change required

Platform

Mac

OS

OS X

Product Version

MEGA 11 (Graphical Interface version)

Target Version

Fixed in Version

Summary

0002371: No common sites

Description

Currently Im trying to create a phylogenetic tree from recent algal paper just to see if I can repeat the results to understand the program. Im coming up with "no common sites" when trying to run the analysis. This seems somewhat odd though because when I use another phylogenetic tree software, its able to handle all the data. I would still like to include all the sequences I'm using since I'm trying to recreate the study specifically using this software. Do you have any recommendations?

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First Name

Lucas

Last Name

Sutton

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Notes
(0004528) gstecher (administrator) 2020-11-23 11:53	Hi Lucas, I am writing in response to your question regarding the MEGA software. In MEGA, distance-based methods require at least one common site between each sequence pair. To work around this, you can remove sequence(s) that share no common sites or use Maximum Likelihood or Maximum Parsimony tree construction methods.

Issue History
Date Modified	Username	Field	Change
2020-11-19 18:36	guest	New Issue
2020-11-23 11:53	gstecher	Note Added: 0004528
2020-11-23 11:53	gstecher	Status	new => resolved
2020-11-23 11:53	gstecher	Resolution	open => no change required
2020-11-23 11:53	gstecher	Assigned To	=> gstecher

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