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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000353 | MEGA | [All Projects] Feedback | public | 2016-12-25 13:10 | 2017-01-18 13:23 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | OS | ||||||||
| Product Version | |||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0000353: an inquiry about constructing similarity index from RAPD genetic analysis | ||||||||
| Description | I have an inquiry is that applicable using Megs software to get a similarity matrix or index (By Jaccard algorithm) from a a sequence of DNA bands from gel electropheresis analysis in RAPD to draw a phlyogenetic tree. Thanks | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Amira | ||||||||
| Last Name | Khattab | ||||||||
| amira.khattab@pua.edu.eg | |||||||||
| Confirm Email | amira.khattab@pua.edu.eg | ||||||||
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(0000243) gstecher (administrator) 1969-12-31 17:33 |
This is related to bug 0000352 |
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(0000244) gstecher (administrator) 1969-12-31 17:33 |
The sequence #MX12NIR_D12-1-seq is longer than the others. Not a bug. |
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(0003734) gstecher (administrator) 2017-01-18 13:23 |
Hi Amira, I am writing in response to your question regarding the MEGA software. To construct a phylogenetic tree using MEGA, you will need a DNA or protein sequence alignment (applicable for all methods) or a pre-computed distance matrix (only applicable for distance methods). -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2016-12-25 13:10 | guest | New Issue | |
| 2017-01-18 13:19 | gstecher | File Deleted: mx12 alignmentGCG.meg | |
| 2017-01-18 13:23 | gstecher | Note Added: 0003734 | |
| 2017-01-18 13:23 | gstecher | Status | new => resolved |
| 2017-01-18 13:23 | gstecher | Resolution | open => no change required |
| 2017-01-18 13:23 | gstecher | Assigned To | => gstecher |
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Issue History |
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