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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000447 | MEGA | [All Projects] Feedback | public | 2017-05-02 19:27 | 2017-05-09 11:53 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | OS | ||||||||
| Product Version | MEGA 11 (Graphical Interface version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0000447: cancer phylogeny | ||||||||
| Description | I am using mega to build a cancer evolution tree. I wonder if I can combine all the mutations we called as a new sort sequence, than infer phylogenetic trees, cause the human genome is large, and we only need the inforamation of thousands of mutations. Thanks | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Cathy | ||||||||
| Last Name | Chen | ||||||||
| chenbingjie1992@126.com | |||||||||
| Confirm Email | chenbingjie1992@126.com | ||||||||
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(0000357) gstecher (administrator) 1969-12-31 17:33 |
This problem is well known to us. Essentially the WINE implementation of the portions of the windows media api are incomplete and/or buggy. We should probably replace the AVI with a GIF when possible. |
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(0003781) gstecher (administrator) 2017-05-09 11:53 |
Hi Cathy, I am writing in response to your question regarding the MEGA software. Yes, you can use MEGA to construct a phylogeny without using the entire human genome, provided that you have assembled your mutation data into a valid sequence alignment. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2017-05-02 19:27 | guest | New Issue | |
| 2017-05-09 11:53 | gstecher | Note Added: 0003781 | |
| 2017-05-09 11:53 | gstecher | Status | new => resolved |
| 2017-05-09 11:53 | gstecher | Resolution | open => no change required |
| 2017-05-09 11:53 | gstecher | Assigned To | => gstecher |
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Issue History |
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