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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0001259 | MEGA | [All Projects] Feedback | public | 2019-06-04 21:02 | 2019-06-07 13:09 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | not fixable | ||||||
| Platform | OS | ||||||||
| Product Version | MEGA 11 (Graphical Interface version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0001259: Error Alignment Failed | ||||||||
| Description | Hi I tried to run 134 whole genome DNA sequence (100kbp) alignment using MUSCLE (neighbor-joining). I keep getting this message "Error Alignment failed: Muscle logfile didn't end properly, suggesting an unhandled exception." However, If i tried 12 sequence on the same protein, the program will work fine. Is there any way I can solve this problem. Thank you for your time to read this email. Kind Regards, Heng Ku | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | heng | ||||||||
| Last Name | Ku | ||||||||
| kuheng3@gmail.com | |||||||||
| Confirm Email | kuheng3@gmail.com | ||||||||
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(0004257) gstecher (administrator) 2019-06-07 13:09 |
Hi Heng, I am writing in response to the bug report you recently submitted regarding the MEGA software. Unfortunately, MEGA is limited in the amount of data it can perform sequence alignment on. You want try MAFFT, which is more suitable for such a large data set. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2019-06-04 21:02 | guest | New Issue | |
| 2019-06-07 13:09 | gstecher | Note Added: 0004257 | |
| 2019-06-07 13:09 | gstecher | Status | new => resolved |
| 2019-06-07 13:09 | gstecher | Resolution | open => not fixable |
| 2019-06-07 13:09 | gstecher | Assigned To | => gstecher |
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Issue History |
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