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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0002693 | MEGA | [All Projects] Feedback | public | 2021-03-30 00:28 | 2021-04-02 07:42 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | OS | ||||||||
| Product Version | MEGA Website | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0002693: Mega x | ||||||||
| Description | Dear Sir/Madam I am doing project with MEGA X software. Unfortunately it is too slow in alignment. How I can speed up for alignment. I am looking forward to hearing from you soon Best regards Rashid | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Rashid | ||||||||
| Last Name | Ramazanzadeh | ||||||||
| atrop_t51@yahoo.com | |||||||||
| Confirm Email | atrop_t51@yahoo.com | ||||||||
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(0002106) Nikita Vikhrev (reporter) 1969-12-31 17:33 |
That web page just shows ridiculous examples. For instance, we can't make any sense of "(,,(,));", "(:0.1,:0.2,(:0.3,:0.4):0.5)" and "A;" as a phylogenetic tree without any OTU labes. In MEGA, all sequences must have unique labels. |
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(0004567) gstecher (administrator) 2021-04-02 07:42 |
Hi Rashid, I am writing in response to your question regarding the MEGA software. Although sequence alignment can be done in MEGA, it is not optimized for sequence alignment. However, there are many software applications that are specialized just for sequence alignment. For instance, you could try MAFFT. Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 1969-12-31 17:33 | Nikita Vikhrev | Note Added: 0002106 | |
| 1969-12-31 17:33 | Nikita Vikhrev | Status | new => closed |
| 1969-12-31 17:33 | Nikita Vikhrev | Resolution | open => won't fix |
| 2021-03-30 00:28 | guest | New Issue | |
| 2021-04-02 07:42 | gstecher | File Deleted: 1.nwk | |
| 2021-04-02 07:42 | gstecher | Note Added: 0004567 | |
| 2021-04-02 07:42 | gstecher | Status | new => resolved |
| 2021-04-02 07:42 | gstecher | Resolution | open => no change required |
| 2021-04-02 07:42 | gstecher | Assigned To | => gstecher |
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Issue History |
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