0002805: Linux compatibility

Notes
(0002231) user614 1969-12-31 17:33	Hello Rebecca, I am responding to your question regarding gamma parameter values for ML inference in MEGA. When using a GTR model for ML inference, a gamma option can be set in the ‘Analysis Preferences’ dialog by expanding the drop down list in the ‘Rates Among Sites’ row and selecting either ‘Gamma Distributed(G)’ or ‘Gamma distributed with invariant sites (G+I)’. In either case, MEGA will estimate the value of the gamma shape parameter and you will not be able to specify your own estimate. You can view the value of the estimated gamma shape parameter by clicking the ‘Caption’ button within the Tree Explorer. Best regards, Glen Stecher

(0002232) user614 1969-12-31 17:33	No problem here, so no change required.

(0004582) gstecher (administrator) 2021-05-11 13:36	Hi Tuba, I am writing in response to your question regarding the MEGA software. MEGA can be run on Linux computers but it is not optimized for distributed or cluster computing. I am guessing that is what you mean by Supercomputer?. Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu

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