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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0002846 | MEGA | [All Projects] Feedback | public | 2021-05-25 17:38 | 2021-05-27 07:27 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | won't fix | ||||||
| Platform | OS | ||||||||
| Product Version | MEGA 11 (Graphical Interface version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0002846: muscle error | ||||||||
| Description | Hi I am Dipon, student of university of british coloumbia. I am trying to use this software for alignment of DNA sequence. I have 2000 DNA sequence. Whenever I am trying to align these sequences using muscle the software showing me this error. " Error-Alignment failed: Muscle log file did not end properly, suggesting an unhandled exception." please let me know how to over come these problem. Thanking you in advance and looking forward to hear from you kind regards, Dipon | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Dipon | ||||||||
| Last Name | Saha | ||||||||
| dipon1992saha@student.ubc.ca | |||||||||
| Confirm Email | dipon1992saha@student.ubc.ca | ||||||||
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(0004597) gstecher (administrator) 2021-05-27 07:27 |
Hi Dipon, I am writing in response to the bug report you recently submitted regarding the MEGA software. MUSCLE is actually a separate software that MEGA uses for sequence alignment. Because it is a separate software, we are not able to debug it and see why the alignment failed. Also, MUSCLE is not designed for use with very large alignments. You should probably use something like MAFFT for sequence alignment as it is engineered for large data. Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 1969-12-31 17:33 | user614 | Note Added: 0002302 | |
| 1969-12-31 17:33 | user614 | Status | new => acknowledged |
| 1969-12-31 17:33 | user614 | Status | acknowledged => closed |
| 2021-05-25 17:38 | guest | New Issue | |
| 2021-05-27 07:22 | gstecher | Note Deleted: 0002302 | |
| 2021-05-27 07:22 | gstecher | File Deleted: crash-report.txt | |
| 2021-05-27 07:27 | gstecher | Note Added: 0004597 | |
| 2021-05-27 07:27 | gstecher | Status | new => resolved |
| 2021-05-27 07:27 | gstecher | Resolution | open => won't fix |
| 2021-05-27 07:27 | gstecher | Assigned To | => gstecher |
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Issue History |
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