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IDProjectCategoryView StatusDate SubmittedLast Update
0003423MEGA[All Projects] Feedbackpublic2022-02-02 10:392022-02-03 09:53
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOS 
Product Version 
Target VersionFixed in Version 
Summary0003423: distance matrices
DescriptionDear Sir or Madam,
I have tried to obtain distance matrices on sequence data (aligment) after grouping them into populations. I succeeded to obtain only one, while I was expecting to obtain many distance matrices because of choosing the bootstrap option. Is it possible to print the bootstrapped matrices? I would like to use it for Barrier software. Could you recommend a way to calculate such pop-based bootstrap matrices in other software it is not possible in Mega? with best wishes, Hanna.
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First NameHanna
Last NamePanagiotopoulou
Emailhanna.panagiotopoulou@gmail.com
Confirm Emailhanna.panagiotopoulou@gmail.com
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(0004794)
gstecher (administrator)
2022-02-03 09:53

Hi Hanna,

I am writing in response to your recent question regarding the MEGA software. No, MEGA does not export matrices when using the bootstrap option for distance estimation. The bootstrap option is only provided for variance estimation.

Best regards,
Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu

- Issue History
Date Modified Username Field Change
2022-02-02 10:39 guest New Issue
2022-02-03 09:53 gstecher Note Added: 0004794
2022-02-03 09:53 gstecher Status new => resolved
2022-02-03 09:53 gstecher Resolution open => no change required
2022-02-03 09:53 gstecher Assigned To => gstecher


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