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IDProjectCategoryView StatusDate SubmittedLast Update
0003619MEGAAlignment Explorerpublic2022-04-21 21:462023-04-14 18:54
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformPCOSLinux 
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
Summary0003619: MEGA keeps crashing
DescriptionReport bugs or other issues regarding the MEGA software

Everytime I try to open alignment explorer, Mega shuts down.
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First NameAnushree
Last Namekrishnamurthy
Emailk_anushree@ibab.in
Confirm Emailk_anushree@ibab.in
Attached Filesxls file icon TemporaryMEGA10.xls (47,104 bytes) 1969-12-31 17:33

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-  Notes
(0002410)
user614
1969-12-31 17:33

Hello Jorg,

I am responding to the question you had regarding the way that MEGA reports codon usage. The way that MEGA reports the codon usage is to give the average frequency of each codon (across all taxa) in the column labeled ‘Count’. Also given is the average# of codons across all taxa. You can convert the average frequencies to a percentage by dividing them by the average # of codons if you like. For example, in domain 1 of your data there is an average of 346 codons. If you divide all the frequencies (for domain 1) by this number you will get the frequency of each given codon expressed as a percentage. These will then sum to 1 (or very close due to rounding). Hope this helps!

Best regards,

Glen Stecher
(0006693)
guest (reporter)
2023-04-14 18:54

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- Issue History
Date Modified Username Field Change
1969-12-31 17:33 user614 Note Added: 0002410
1969-12-31 17:33 user614 Status new => resolved
1969-12-31 17:33 user614 Resolution open => no change required
1969-12-31 17:33 user614 Assigned To => user614
2022-04-21 21:46 guest New Issue
2023-04-14 18:54 guest Note Added: 0006693


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