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ID | Project | Category | View Status | Date Submitted | Last Update | ||||||||
0003850 | MEGA | Alignment Explorer | public | 2022-08-03 02:15 | 2023-04-14 18:49 | ||||||||
Reporter | guest | ||||||||||||
Assigned To | |||||||||||||
Priority | normal | Severity | minor | Reproducibility | have not tried | ||||||||
Status | new | Resolution | open | ||||||||||
Platform | PC | OS | Windows | ||||||||||
Product Version | MEGA 11 (Graphical Interface version) | ||||||||||||
Target Version | Fixed in Version | ||||||||||||
Summary | 0003850: Keeps crashing while running alignment | ||||||||||||
Description | I am trying to perform a DNA sequence alignment using a file from my system. The "Progress" window pops up and immediately crashes, shutting down the tool itself. I am trying to do it for 5-6 times now. It's still the same. | ||||||||||||
Tags | No tags attached. | ||||||||||||
Attach Tags | (Separate by ",") | ||||||||||||
First Name | PURBITA | ||||||||||||
Last Name | SIKDAR | ||||||||||||
titir99kol@gmail.com | |||||||||||||
Confirm Email | titir99kol@gmail.com | ||||||||||||
Attached Files | |||||||||||||
Notes | |
(0002684) user19 1969-12-31 17:33 |
According to the mafft website there doesn't appear to be any specific preset to use for alignment of nucleotides vs. protein data. There are some more specific options such as gap open and gap extend parameters, although there are no clear default values given by MAFFT. Unless gap parameters are really important it would be best to just leave them out and use the presets. |
(0006633) guest (reporter) 2023-04-14 18:49 |
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Issue History | |||
Date Modified | Username | Field | Change |
1969-12-31 17:33 | user614 | New Issue | |
1969-12-31 17:33 | user614 | Summary | Mafft presets are not available when aligning amino acid data => Mafft presets are not available when aligning amino acid data or when aligning codons |
1969-12-31 17:33 | user614 | Description Updated | |
1969-12-31 17:33 | user19 | Note Added: 0002684 | |
1969-12-31 17:33 | user19 | Status | new => resolved |
1969-12-31 17:33 | user19 | Resolution | open => fixed |
1969-12-31 17:33 | user19 | Assigned To | => user19 |
2022-08-03 02:15 | guest | New Issue | |
2023-04-14 18:49 | guest | Note Added: 0006633 |
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