0004564: Tree with bootstrap values exports invalid Newick format

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Date Submitted

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0004564

MEGA

Tree Explorer

public

2023-02-17 18:29

2023-04-14 00:44

Reporter

guest

Assigned To

Priority

normal

Severity

minor

Reproducibility

have not tried

Status

new

Resolution

open

Platform

Mac

OS X

Product Version

MEGA 11 (Graphical Interface version)

Target Version

Fixed in Version

Summary

0004564: Tree with bootstrap values exports invalid Newick format

Description

I built a tree using ML and 100 iterations to calculate bootstrap values. The tree is pasted below in the exported Newick format, however, there are unbalanced parentheses at:

Cav_Tom_Cav03g18710)0.8500((Cav_Tom_Cav03g18700,Cam_g10982,Chet_BJ_EVM0013486,Cav_Tom_Cav03g18690)0.7200

I believe. In any event this file cannot be opened by other programs.

Please let me know how to fix this, as I'd like to study this tree in other programs. I am uploading the Tree Explorer session in .mtsx format.

Steps To Reproduce

((((((((((Chet_BJ_EVM0006124,Chet_JL_Cor0014550.1,Cav_TGdL_Haze_02754)0.6900,Cam_g3412)1.0000,(Cav_TGdL_Haze_07943,Chet_JL_Cor0163760.1)1.0000,(Osat_10g41130.1,(Osat_04g46440.1,Osat_02g43970.1)1.0000)0.6200,Osat_04g46400.1,Chet_JL_Cor0156810.1,((Chet_BJ_EVM0011762,Cav_Tom_Cav07g13740)1.0000,(((Chet_JL_Cor0193550.1,Cav_Tom_Cav11g13170)0.7200,Cav_TGdL_Haze_25802)1.0000,(Chet_JL_Cor0051550.1,(Cav_TGdL_Haze_21884,Cam_g24838)0.8900)1.0000)0.8000)0.9600)0.9700,((Cav_TGdL_Haze_08951,Cav_Tom_Cav03g18670)1.0000,((Chet_BJ_EVM0013717,Cman_G0007739)0.5200,Cam_g26066,(Cav_Tom_Cav09g01740,Cav_TGdL_Haze_19546)0.6100)1.0000)0.9500)0.9900,(Osat_01g73770.1,((Cav_Tom_Cav10g05610,Chet_BJ_EVM0021922,Cman_G0012172)1.0000,(Cav_TGdL_Haze_19557,Chet_BJ_EVM0020113,(Cav_Tom_Cav09g01950,Cman_G0007747)0.5200)1.0000)0.7900)0.5400)0.7900,((Osat_04g48350.1,Osat_02g45450.1)1.0000,(Osat_06g03670.1,Osat_09g35030.1)0.5900)0.9600)0.6700,(At_CBF3,(At_CBF1,At_CBF2)0.7900)1.0000)0.9400,((((Bpen_c2812,Bpen_c0079_dupelabel1)0.8000,Bpen_c0079)0.7200,(Bpen_c0075_dupelabel1,Bpen_c0075)0.9400)0.9000,(Cman_G0014289,(Cman_G0014293,Cman_G0014291)0.5600,(Cam_g17287,((Cav_Tom_Cav05g12880,Cav_TGdL_Haze_13764)0.7000,Cam_g17283)0.5000,(Chet_BJ_EVM0003046,Chet_JL_Cor0119160.1)0.9300,(Chet_JL_Cor0119170.1,Cam_g17285,Chet_BJ_EVM0011084,(Cav_Tom_Cav05g12910,Cav_Tom_Cav05g12900)0.6300)0.5400)0.5000)1.0000)0.9900)1.0000,((Bpen_c0278_dupelabel3,Bpen_c0278_dupelabel2)0.6300,(Bpen_c0278,Bpen_c0278_dupelabel1)1.0000)0.8800)0.9300,Cav_TGdL_Haze_08953,(Cam_g10983,Cman_G0022097,Chet_JL_Cor0080960.1,Cav_Tom_Cav03g18710)0.8500((Cav_Tom_Cav03g18700,Cam_g10982,Chet_BJ_EVM0013486,Cav_Tom_Cav03g18690)0.7200,Cman_G0022096)0.9800,(((Chet_BJ_EVM0008440,Cman_G0022095)0.6200,Chet_JL_Cor0080950.1)0.7700,Cam_g10981,(Cman_G0022094,((Cav_TGdL_Haze_08952,Cav_Tom_Cav03g18680)0.7500,(Cam_g10980,(Chet_BJ_EVM0017023,Chet_JL_Cor0080940.1)0.8200)0.6900)0.8500)0.9900)0.6200);

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First Name

Scott

Last Name

Brainard

shbrainard@wisc.edu

Confirm Email

shbrainard@wisc.edu

Attached Files

all_seqs_msa.mtsx (84,730 bytes) 2023-02-17 18:29

Relationships

Notes
(0006242) guest (reporter) 2023-04-14 00:44	https://www.estoolcarbide.com/product/spmg-inserts-u-drill-insert-p-1208/ [^] [SPMG U Drill Inserts] http://various-styles.doorblog.jp/ [^] [http://various-styles.doorblog.jp/ [^]] https://douglasvio.exblog.jp/ [^] [carbide wear rods] https://marcyoswal.exblog.jp/ [^] [steel inserts] https://leonarddei.exblog.jp/ [^] [tungsten carbide stock] https://hugoamos.exblog.jp/ [^] [carbide drilling inserts] https://ryanberger.exblog.jp/ [^] [surface milling inserts] http://worthy.blog.jp/ [^] [http://worthy.blog.jp/ [^]] https://leopoldway.exblog.jp/ [^] [milling inserts]

Issue History
Date Modified	Username	Field	Change
2023-02-17 18:29	guest	New Issue
2023-02-17 18:29	guest	File Added: all_seqs_msa.mtsx
2023-04-14 00:44	guest	Note Added: 0006242

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