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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000513 | MEGA | Text Editor | public | 2017-08-02 13:27 | 2017-09-19 07:24 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | Mac | OS | OS X | ||||||
| Product Version | MEGA 11 (Graphical Interface version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0000513: Large input file size | ||||||||
| Description | Dear MEGA7, I want to use mega7 to reconstruct a NJ tree of my subject genomes. I have 476 sequences, with each sequence having 930,000 bases in length. So the total size of my input file is about 450 Mb. You know, when I used the MEGA-GUI version, I got the error information "The file you are trying to open is too large for MEGAs text editor to handle." So I tried the CC-version instead, but it said "Error: Line Too Long (in line 4)". Thus, except for reducing my file size, how can I do now? | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Qing | ||||||||
| Last Name | Liu | ||||||||
| qingpol@uci.edu | |||||||||
| Confirm Email | qingpol@uci.edu | ||||||||
| Attached Files | |||||||||
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(0003843) gstecher (administrator) 2017-08-16 08:08 |
Hi Qing, I am writing in response to your question regarding the MEGA software. What format is you alignment file in? With most formats, you add line endings (typically every 80 characters) to your sequences so that they are distributed over multiple lines and lines are not very long. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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(0003848) gstecher (administrator) 2017-09-19 07:24 |
no response from user |
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Notes |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2017-08-02 13:27 | guest | New Issue | |
| 2017-08-16 08:05 | gstecher | Note Deleted: 0000393 | |
| 2017-08-16 08:05 | gstecher | Note Deleted: 0000442 | |
| 2017-08-16 08:05 | gstecher | Note Deleted: 0000423 | |
| 2017-08-16 08:08 | gstecher | Assigned To | => gstecher |
| 2017-08-16 08:08 | gstecher | Status | new => assigned |
| 2017-08-16 08:08 | gstecher | Note Added: 0003843 | |
| 2017-08-16 08:08 | gstecher | Relationship added | has duplicate 0000512 |
| 2017-09-19 07:24 | gstecher | Note Added: 0003848 | |
| 2017-09-19 07:24 | gstecher | Status | assigned => resolved |
| 2017-09-19 07:24 | gstecher | Resolution | open => no change required |
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Issue History |
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