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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000662 | MEGA | Alignment Explorer | public | 2018-02-16 08:38 | 2018-02-27 10:10 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | won't fix | ||||||
| Platform | PC | OS | Linux | ||||||
| Product Version | MEGA-CC 11 (command line version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0000662: Memory Usage | ||||||||
| Description | Memory usage of Megacc does not stop increasing until all the Memory is used. | ||||||||
| Additional Information | my command is megacc -a file.mao -d file.fasta -o output.meg size of fasta file= 129M | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Ines | ||||||||
| Last Name | Tiouiri | ||||||||
| inestiouiri4@gmail.com | |||||||||
| Confirm Email | inestiouiri4@gmail.com | ||||||||
| Attached Files | |||||||||
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(0003913) gstecher (administrator) 2018-02-21 10:47 |
Hi Ines, I am writing in response to the bug report you recently submitted regarding the MEGA software. It sounds like the data file you are using (129 MB) is too large for the analysis you are running. Could you send me the .mao and .fasta files you are using so I can duplicate the issue? -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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(0003917) gstecher (administrator) 2018-02-27 10:10 |
Hi Ines, Thanks for sending those files. That dataset and the settings used are probably not going to work for megacc. I recommend downloading 64-bit MUSCLE from https://www.drive5.com/muscle/ [^] and using it directly as it has some useful options that are not available in megacc. If that doesn't work, I recommend using MAFFT which is available from https://mafft.cbrc.jp/alignment/software/ [^] |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2018-02-16 08:38 | guest | New Issue | |
| 2018-02-21 10:41 | gstecher | Note Deleted: 0000597 | |
| 2018-02-21 10:47 | gstecher | Assigned To | => gstecher |
| 2018-02-21 10:47 | gstecher | Status | new => assigned |
| 2018-02-21 10:47 | gstecher | Note Added: 0003913 | |
| 2018-02-27 10:10 | gstecher | Note Added: 0003917 | |
| 2018-02-27 10:10 | gstecher | Status | assigned => resolved |
| 2018-02-27 10:10 | gstecher | Resolution | open => won't fix |
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Issue History |
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