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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000893 | MEGA | [All Projects] Feedback | public | 2018-08-13 19:23 | 2018-08-14 13:58 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | OS | ||||||||
| Product Version | MEGA-CC 11 (command line version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0000893: trees between group | ||||||||
| Description | I have 5 groups of protein obtained from various species. I would like draw a tree that display the overall distance between each specie (i.e a tree with only 5 taxa corresponding to each of my species) Currently, the tree that I can obtain using MEGA X is quite mess with all the proteins mixed and sorted according to their homogy. Mega is able to calculate a distance matrix between each species but I can't find where to generate a tree using those information. Can you help? | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Anthony | ||||||||
| Last Name | S | ||||||||
| azerty3141@yahoo.fr | |||||||||
| Confirm Email | azerty3141@yahoo.fr | ||||||||
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(0004094) gstecher (administrator) 2018-08-14 13:58 |
Hi Anthony, I am writing in response to your question regarding the MEGA software. From your question it sounds like you want to generate a tree where sequence data are grouped by species. To do so you can do the following: Compute between-group distances for your data Export the distance matrix to a MEGA formatted file (.meg) Open the .meg file in MEGA Construct a Neighbor-Joining, Minimum Evolution, or UPGMA tree. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Issue History |
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| Date Modified | Username | Field | Change |
| 2018-08-13 19:23 | guest | New Issue | |
| 2018-08-14 07:17 | gstecher | Note Deleted: 0000819 | |
| 2018-08-14 13:58 | gstecher | Note Added: 0004094 | |
| 2018-08-14 13:58 | gstecher | Status | new => resolved |
| 2018-08-14 13:58 | gstecher | Resolution | open => no change required |
| 2018-08-14 13:58 | gstecher | Assigned To | => gstecher |
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Issue History |
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